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Old 21st October 2019
Lives for gear
You can consolidate all the audio tracks from a common start time, and export those new audio files to a folder. Import those audio files into Logic, set them all to a common start time, and you will have your audio intact and in time.

There is no way to keep the mix intact beyond your idea to bounce the tracks one at a time. Plugins are not compatible between logic and protools, mix settings do not translate, etc.