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If Aero is killing performance I recommend checking both the resource sharing with your graphics card's slot/IRQ and to see if you're using a card that is DX10 capable & has WDM 1.1 whql drivers... Win7 made significant improvements in the compositing engine used in Aero so now the GDI/GDI+ legacy path is no longer cpu bound (as it was in Vista) but gets composited on the card as well. The WDDM 1.0 > 1.1 move reduced 2d performance a bit to gain back a fair amount of ram overhead that WDDM 1.0/Vista had.
Unfortunately if you're having resource sharing issues, disabling aero 'seems' to fix it as the IRQ sharing is less of a problem, but you push all compositing back on the CPU.
Also fwiw, all of my Xeon machines have more than 4 addressing lines (due to typically having PCI-X & PCI bus lines in addition to more PCIe slots) and so IRQ sharing has been much less of an issue for me from the i860 (first P4 Xeons) on up...
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